Some of the recent projects

Role of cereal leaf beetle – associated bacteria in the adaptation of their insect host to the insecticides and protease inhibitors used

• Project is a part of grant 2020/37/N/NZ9/02577 funded by National Science Centre Poland

• My role: Statistical analysis of biodiversity in microbiome based on 16S rRNA gene sequencing including:

  • Appliacation and validation of appriopriate statistical model to fit the data
  • Calculation of alpha, beta biodiversity in considered groups
  • Statistical verification of differences between considered groups
  • Bacterial community composition

The application of transcriptome profiling to identify genes associated with umbilical hernia in pigs

• Project is a part of grant 2019/33/B/NZ9/00654 funded by National Science Centre Poland

• My role: Statistical and bioinformatical analysis of RNA-seq data including:

  • Quality control of sequencing data
  • Cleaning of the data
  • Mapping
  • Quality of experimental design
  • Differential analysis
  • Functional pathways and gene ontology

Identification of genetic and epigenetic markers associated with canine cryptorchidism

• Project is a part of grant 2018/29/B/NZ9/01065 funded by National Science Centre Poland

• My role: Statistical and bioinformatical analysis of RNA-seq data including:

  • Quality control of sequencing data
  • Cleaning of the data
  • Mapping
  • Quality of experimental design
  • Differential analysis
  • Functional pathways and gene ontology
  • Analysis of SNPs

A comprehensive characteristics of candidate genomic regions for canine monogenic disorders of sex development, analyzed with the use of next generation sequencing (NGS) and droplet digital PCR (ddPCR)

• Project is a part of grant 2016/23/B/NZ9/03424 funded by National Science Centre Poland

• My role: Statistical analysis of CNV regions including:

  • Estimation of the size of CNVs in data
  • Seeking CVNs that can be connected to DSD

The role of bacteria in the plant-insect interaction in the Triticum aestivum-Oulema melanopus system

• Project is a part of grant 2016/23/B/NZ9/03503 funded by National Science Centre Poland

• My role: Statistical analysis of biodiversity in microbiome based on 16S rRNA gene sequencing including:

  • Appliacation and validation of appriopriate statistical model to fit the data
  • Calculation of alpha, beta biodiversity in considered groups
  • Statistical verification of differences between considered groups
  • Bacterial community composition

Human ovarian cancer cell culture model for paclitaxel-induced inverse resistance to paclitaxel and cisplatin and use thereof

• Project was a part of grant N401 532740 funded by Ministry of Science and Higher Education Poland
• My role: Statistical and bioinformatical analysis of survival data and RNA-seq data including:
  • Statistical verification of differences between considered cell lines
  • Quality control of sequencing data
  • Cleaning of the data
  • Mapping
  • Quality of experimental design
  • Differential analysis
  • Functional pathways and gene ontology
• Project finished with patent (PAT.233178)